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i don't understand...

Posted by semonteer at 2005-11-02 15:40:32 on Problem 2520 
-AAGA-C-G
CA-GAGCTC
The total score is 3+0+3+0+0+3+0+3+4=16. 

?? why not ?

AAGA-C-G
CAGAGCTC
50003034

5+3+3+4 = 15 ?

Why?
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